我的问题是，在我调用窗口上的makeKeyAndVisible()之前，我在UIApplicationDelegate的didFinishLaunchingWithOptions方法中执行segue。

In case it helps anyone, my issue was extremely silly. Totally my fault of course. A notification was triggering a method that was calling the modal. But I wasn't removing the notification correctly, so at some point, I would have more than one notification, so the modal would get called multiple times. Of course, after you call the modal once, the viewcontroller that calls it it's not longer in the view hierarchy, that's why we see this issue. My situation caused a bunch of other issue too, as you would expect.

总之，无论你做什么，都要确保模态不会被调用超过一次。

使用故事板，我注意到我有一个按钮连接到两个@IBActions，这两个@IBActions函数分别呈现一个ViewController。在我移除一个连接后，问题就解决了。

你从哪里调用这个方法?我有一个问题，我试图在viewDidLoad方法中呈现一个模态视图控制器。我的解决方案是将这个调用移动到viewDidAppear:方法。

我的假设是，视图控制器的视图在它被加载时(当viewDidLoad消息被发送时)不在窗口的视图层次结构中，但在它被呈现后(当viewDidAppear:消息被发送时)它在窗口层次结构中。

谨慎

如果你确实调用了viewDidAppear:中的presentViewController:animated:completion:，你可能会遇到这样一个问题，即每当视图控制器的视图出现时，模态视图控制器总是被呈现(这是有意义的!)，因此模态视图控制器被呈现永远不会消失……

也许这不是呈现模态视图控制器的最佳位置，或者可能需要保留一些额外的状态让呈现的视图控制器决定是否应该立即呈现模态视图控制器。

在主窗口中，可能总是会出现与显示警报不兼容的过渡。为了允许在应用程序生命周期的任何时候显示警报，您应该有一个单独的窗口来完成这项工作。

/// independant window for alerts
@interface AlertWindow: UIWindow

+ (void)presentAlertWithTitle:(NSString *)title message:(NSString *)message;

@end

@implementation AlertWindow

+ (AlertWindow *)sharedInstance
{
    static AlertWindow *sharedInstance;
    static dispatch_once_t onceToken;
    dispatch_once(&onceToken, ^{
        sharedInstance = [[AlertWindow alloc] initWithFrame:UIScreen.mainScreen.bounds];
    });
    return sharedInstance;
}

+ (void)presentAlertWithTitle:(NSString *)title message:(NSString *)message
{
    // Using a separate window to solve "Warning: Attempt to present <UIAlertController> on <UIViewController> whose view is not in the window hierarchy!"
    UIWindow *shared = AlertWindow.sharedInstance;
    shared.userInteractionEnabled = YES;
    UIViewController *root = shared.rootViewController;
    UIAlertController *alert = [UIAlertController alertControllerWithTitle:title message:message preferredStyle:UIAlertControllerStyleAlert];
    alert.modalInPopover = true;
    [alert addAction:[UIAlertAction actionWithTitle:@"OK" style:UIAlertActionStyleCancel handler:^(UIAlertAction *action) {
        shared.userInteractionEnabled = NO;
        [root dismissViewControllerAnimated:YES completion:nil];
    }]];
    [root presentViewController:alert animated:YES completion:nil];
}

- (instancetype)initWithFrame:(CGRect)frame
{
    self = [super initWithFrame:frame];

    self.userInteractionEnabled = NO;
    self.windowLevel = CGFLOAT_MAX;
    self.backgroundColor = UIColor.clearColor;
    self.hidden = NO;
    self.rootViewController = UIViewController.new;

    [NSNotificationCenter.defaultCenter addObserver:self
                                           selector:@selector(bringWindowToTop:)
                                               name:UIWindowDidBecomeVisibleNotification
                                             object:nil];

    return self;
}

/// Bring AlertWindow to top when another window is being shown.
- (void)bringWindowToTop:(NSNotification *)notification {
    if (![notification.object isKindOfClass:[AlertWindow class]]) {
        self.hidden = YES;
        self.hidden = NO;
    }
}

@end

在设计上总是成功的基本用法:

[AlertWindow presentAlertWithTitle:@"My title" message:@"My message"];

用Swift 3…

另一个可能的原因，发生在我身上，是从一个tableViewCell segue到Storyboard上的另一个ViewController。当单元格被单击时，我还使用override func prepare(for segue: UIStoryboardSegue, sender: Any?){}。

我通过创建一个从ViewController到ViewController的segue来解决这个问题。